CT Barry Abstracts

1. Barry CT, Runnels J, and Rosenberg N.  Common integration sites in Moloney murine leukemia virus immortalized B cell lines.  RNA Tumor Viruses Meeting.  Cold Spring Harbor Laboratory, 1991.

2. Barry CT, Runnels J, and Rosenberg N.  Identification of two common integration sites in Moloney murine leukemia virus immortalized B cell lines.  RNA Tumor Viruses Meeting.  Cold Spring Harbor Laboratory, 1992.

3. Barry CT, and Rosenberg N.  Two putative proto-oncogenes activated in Moloney murine leukemia virus immortalized mouse B cell lines.  Retroviruses Meeting Platform Presentation.  Cold Spring Harbor Laboratory, 1993.

4. Barry CT, Cao S, Monge T, So SK, Esquivel CO, and Brown PO.  Towards a genomic analysis of transplant immunobiology and related phenomena.  Transplantation 1998; 65(12):S35.

5. Barry CT, Cao S, Monge T, So SK, Esquivel CO, and Brown PO.  An in vitro RNA amplification strategy allows cDNA microarray analysis of small amounts of tissue.  Transplantation 1998; 66(8):S48.

6. Barry CT, Cao S, Monge T, So SK, Esquivel CO, and Brown PO.  Analysis of phenomena pertinent to transplant immunobiology using cDNA microarrays.  Oral presentation to the World Congress of the Transplantation Society; Montreal, 1998.

7. Fan H, Barry CT, Lin Q, Baek SC, Brown PO, and Khavari PA.  Genomic analysis of human squamous cell carcinoma gene expression via cDNA microarrays.  American Society of Dermatology.  Chicago, 1999.

8. Fan H, Barry CT, Baek SC, Lin Q, Brown PO, and Khavari PA.  Analysis of human basal cell carcinoma gene expression at a genomic scale via cDNA microarrays.  American Society of Dermatology.  Chicago 1999.

9. Freiberg RA, Barry CT, Fang M, Alvarez-Saavedra E, Robbins P, Brown PO, and Khavari PA.  cDNA microarray screening for genes differentially expressed in keratinocyte stem cell enriched populations.  American Society of Dermatology.  Chicago, 1999.

10. Freiberg RA, Barry CT, Brown PO, and Khavari PA.  Identification of new keratinocyte differentiatioin candidates genes by genome-wide screening approach.  American Society of Dermatology.  Chicago, 1999.

11. Hinata K, Barry CT, Brown PO, and Khavari PA.  Genome-wide characterization of NF-kB target genes in human epithelial cells via high density cDNA microarrays.  American Society of Dermatology.  Chicago, 1999.

12.    Barry CT, Sarwal M, Chang S, Salvatierra O, and Brown PO.  Genomic analysis of acute allograft rejection using DNA microarrays.  18th Annual Meeting of the American Society of Transplantation.  May 1999.

13. Barry CT, He XS, Greenberg H, and Brown PO.  Genomic analysis of hepatitis C virus infection using DNA microarrays.  The 18th Annual Meeting of the American Society of Transplantation.  May 1999.

14. Barry CT, Watanabe S, Mocarski ES, and Brown PO.  Analysis of host viral interactions in CMV infection using DNA microarrays.  The 18th Annual Meeting of the American Society of Transplantation.  May 1999.

15. Barry CT, Millan M, Monge H, Esquivel C, Brown P, and So S.  Genomic analysis of human hepatocellular carcinoma gene expression using cDNA microarrays.  The 18th Annual Meeting of the American Society of Transplantation.  May 1999.

16. Barry CT, Botstein D, Brown P, and So S.  Genomic analysis of human hepatocellular carcinoma gene expression using cDNA microarrays.  Oral Presentation, Second International Symposium on Hepatology.  Beijing, China, December 1999.

17. Milan M, Lai K, Keefe E, Fischer G, Razavi M, Prapong W, Barry C, Esquivel C, and So S.  Liver transplantation for hepatocellular carcinoma and the role of preoperative chemoembolization.  Transplant 2000.  Chicago, May 2000.

18. Sarwal M, Barry C, Chang S, Chen X, Amir B, Salvatierra O, and Brown P.  Genomic analysis of allograft dysfunction using cDNA microarrays.  Oral Presentation, Transplant 2000.  Chicago, May 2000.

19.  Barry CT, Chen X,  Botstein D, So S, and Brown PO. Gene Expression Patterns in Human Liver Cancers. Oral Presentation, World Congress of the Transplantation Society, Rome, August 2000.

20. Barry CT, McTaggart R, Roberts JP, and Feng S.  Gene expression profiling of liver regeneration in a mouse hepatectomy model.  American Transplant Congress.  Boston, May 2004.  Am J Transplant 2004; 4 (suppl 8):466.

21. Barry CT, Liu T, Roberts JP, Hirose R, and Niemann CU.  Expression of Survivin, an anti-apoptosis gene, in a fatty rat cold ischemia model.  International Hepatobiliary Association Congress.  Washington DC, June 2004.

22. Barry CT, Behrends M, Liu T, Roberts JP, Hirose R, and Niemann CU:  Ischemic preconditioning upregulates anti-apoptosis genes and downregulates the notch signaling pathway in a rat fatty liver cold ischemia model.  ASTS Winter Symposium.  Scottsdale AZ, February 2006.

23.    Kashyap R, Kahyap S, Safadjou S, Ryan C, Yarid N, Agarwal S, Ramalingam S, Maliakkal B, Marroquin CE, Barry CT, and MS Orloff. Does explant histology predict HCV recurrence? American Transplant Congress, San Diego, CA, May 2010. Am J Transplant 2010; suppl 4(10):258.

24. Zand MS, Henn A, Laski M, Barry CT, Orloff MS, and Hyrien O. Functional division of labor between CpG-stimulated CD27high and CD27med human memory B cells. American Transplant Congress, San Diego, CA, May 2010. Am J Transplant 2010; suppl 4(10):401.

25. Kashyap R, Safadjou S, Agarwal S, Ramalingam S, Ramaraju G, Marroquin CE, Barry CT, Hexel AF, Khorana A, and Orloff MS. Effectiveness of bridge therapy for hepatocellular carcinoma based on explant pathology-single center experience. American Transplant Congress, San Diego, CA, May 2010. Am J Transplant 2010; suppl 4(10):453.

26. Zand MS, Barry CT, Marroquin CE, Orloff MS, and Bodell MA. Mathematical modeling of immune desensitization: the impact of plasma exchange volumes and immunoglobulin re-synthesis rates on achieving target allo- and isohemagglutinin antibody levels. American Transplant Congress, San Diego, CA, May 2010. Am J Transplant 2010; suppl 4(10):486.

27. Kashyap R, Safadjou S, Vineyard T, Agarwal S, Ramalingam S, Khorana A, Hezel A, Ramaraju G, Maliakkal B, Marroquin CE, Barry CT,  and MS Orloff.  Bridge Therapy for HCC outside Milan Criteria. International Liver Transplant Society 16th International Congress, Hong Kong, June 2010.

28.    Kashyap R, Abt PL, Safadjou S, Agarwal S, Ramalingam S, Maliakkal B, Ramaraju G, Marroquin CE, Barry CT, and  MS Orloff. Primary Liver Team or Local Team for Liver Procurement: Can This Impact Graft Outcome? International Liver Transplant Society 16th International Congress, Hong Kong, June 2010.

29. Kashyap R, Safadjou S, Ryan C, Yarid NA, Agarwal S, Ramalingam S,  Bryan L, Batzold P, Maliakkal B, Ramaraju G, Marroquin CE, Barry CT, and MS Orloff. Can We Determine HCV Recurrence from Explant Pathology? International Liver Transplant Society 16th International Congress, Hong Kong, June 2010.

30. Rodrigues R and CT Barry. Systems Biology Approaches Allow Cohesive Analysis of Disparate Hepatocellular Carcinoma Genomic Expression Datasets. Academic Surgical Congress, Huntington Beach, CA, February 2011.

31. Barry C, D’Souza M, Ryan C, Safadjou S, Kashyap R, Marroquin C, Orloff M, Almudevar A, and T Godfrey. Micro RNA Analysis of Hepatocellular Carcinoma Recurrence After Liver Transplant. American Transplant Congress, Philadelphia, PA, May 2011 Am J Transplant 2011; suppl 2(11):129

32. Barry C, D’Souza M, Ryan C, Safadjou S, Kashyap R, Marroquin C, Orloff M, Almudevar A, and T Godfrey. Multifocal Hepatocellular Carcinoma Micro RNA Expression Patterns. American Transplant Congress, Philadelphia, PA, May 2011 Am J Transplant 2011; suppl 2(11):128.

33. Barry C, Mills B, Ha J, Mooney R, Safadjou S, Ryan C, Rubens D, and K Parker. Ultrasonographic Hepatic Steatography: A Noninvasive Method To Measure Intrahepatic Fat Content. American Transplant Congress, Philadelphia, PA, May 2011 Am J Transplant 2011; suppl 2(11):462.

34. Rodrigues R and C Barry. Gene Pathway Meta-Analysis Describes Two Clinically Distinct Hepatocellular  Carcinoma Subtypes. American Transplant Congress, Philadelphia, PA, May 2011 Am J Transplant 2011;  suppl 2(11):273.

35. Kashyap R, Samra M, Safadjou S, Dombroski D, Chekuri S, Kashyap M, Agarwal S, Vijayaragavan P, Ramaraju G, Barry C, Marroquin C, Orloff M and B Maliakkal. Cardiac Outcome Risk Assessment  Before and After Liver Transplantation. American Transplant Congress, Philadelphia, PA, May 2011 Am J Transplant 2011; suppl 2(11):489.

36. Ran Y and C Barry. Analysis of Micro RNA Expression in Recurrent Hepatocellular Carcinoma After Liver Transplantation. National Council on Undergraduate Research, Ithaca, NY March 2011.

37. Kashyap R, Safadjou S, Vetter M, Milot P, Batzold P, Bryan L, Salter M, Maliakkal B, Agarwal S, Vijayaragavan P, Barry C, Marroquin C, Ramaraju G, Nickels M and M Orloff. Alcohol Recidivism After Liver Transplantation in Patients with High MELD Scores at Time of Listing. International Liver Transplant Society, Valencia, Spain, June 2011.

38. Kashyap R, Safadjou S, Maliakkal B, Vineyard T, Agarwal S, Vijayaragavan P, Ramaraju G,  Barry C, Marroquin C and M Orloff. Waiting Time for Liver Transplant Recipients; Single Center Experience (UNOS Region – 9). International Liver Transplant Society, Valencia, Spain, June 2011.

39. Kashyap R, Samra M, Safadjou D, Dombroski D, Chekuri S, Kashyap M, Agarwal S, Vijayaragavan P, Ramaraju G, Barry C, Marroquin C, Orloff M and B Maliakkal. Pre transplant evaluation of coronary and aortic calcification on non contrast CT: Impact on post liver transplantation cardiac outcomes. International Liver Transplant Society, Valencia, Spain, June 2011.

40. Khan N, Reback M, and CT Barry. bLifeNY: Raising Organ Donation Awareness. International Transplant Nurses Society, Rochester, NY, September 2011.

41. Mills B, Barry CT, Hah Z, Rubens JD and K Parker. Using Crawling Wave Sonoelastography For the Measurement of Intrahepatic Fat Content. Tenth International Tissue Elasticity Conference, Arlington, Texas, October 2011.

42. Bandla S, D’Souza M, Safadjou S, Ryan C, Godfrey T and CT Barry. DNA Copy Number Analysis of Recurrent Hepatocellular Carcinoma After Liver Transplant. American Association for the Study of Liver Diseases Liver Meeting, San Francisco, CA, November 2011.

43. Barry CT, D’Souza M, McCall M, Ryan C, Safadjou S, Orloff M, Almudevar A, and TE Godfrey. Discovery of a Micro RNA Biomarker Distinguishing Hepatocellular Carcinoma Patients With and Without Recurrence After Liver Transplant. American Association for the Study of Liver Diseases Liver Meeting, San Francisco, CA, November 2011.

44. Kashyap R, Vijayaragavan P, Safadjou S, Maliakkal B, Tu X, Arora J, Barry CT, Marroquin C, Ramaraju G, and Orloff M. Impact of DonorNet Based Liver Allocation on the Waiting Time and the Waitlist Mortality for Patients Awaiting Liver Transplantation- A Single Center Data from UNOS Region IX. American Association for the Study of Liver Diseases Liver Meeting, San Francisco, CA, November 2011.

45. Manivannan M and CT Barry. Genomic characterization of hepatic stem cells during liver regeneration. 7th Annual Academic Surgical Congress. Las Vegas, NV. February 2012.

46. Barry CT, McCall M, Godfrey T and A Almudevar, Refinement of Molecular Biomarker Selection Procedures in Multifocal Hepatocellular Carcinoma. 3rd International Conference on Transplantomics and Biomarkers in Organ Transplantation. La Jolla, CA. March, 2012.

47. Barry CT, Manivannan M, Kashyap R, Maroquin C and M Orloff. Correlating DNA Copy Number Changes with MiRNA Expression in Liver Transplant Recipients with Hepatocellular Carcinoma. International Liver Transplant Society, San Francisco, May 2012.

48. Manivannan M and CT Barry. Gene Pathway Analysis of Stem Cell Enriched Liver Regeneration Genomic Profiles. American Transplant Congress, Boston, June 2012.

49.  Barry CT, Hah Z, Partin A, Cao WQ, Mooney R, Rubens D and K Parker. Ultrasonographic Steatography is Sensitive in Detecting Low Levels of Hepatic Steatosis. American Transplant Congress, Boston, June 2012.

50. Kashyap R, Vijayaragavan V, Safadjou S, Dokus MK, Srivastava A, Georgantis G, Maliakkal B, Ramaraju G, Huang J, Barry CT, Marroquin C and M Orloff.  Analysis of UNOS data to compare the trends of waiting list registrations and waiting time for liver transplantation across various geographic regions. American Transplant Congress, Boston, June 2012.

51. Hah Z, Partin A, Barry CT, Mooney RA, Rubens DJ and KJ Parker. Dispersion and shear-wave velocity in a mouse liver model using crawling waves. Ultrasonic Imaging and Tissue Characterization Symposium, Rosslyn, VA, June 2012.

52. Gierlach J, Khan N, Reback M, Orloff M and CT Barry. Social Media Networking Among College and High School Students to Raise Organ Donation Awareness. International Transplant Nurses Society Symposium, Seattle, October 2012.

53. Hah Z, Partin A, Zimmerman G, Parker KJ, Barry CT, Mooney RA and DJ Rubens. Shear Wave Dispersion Measures Fat Concentration in a Mouse Liver Model. Eleventh International Conference on the Ultrasonic Measurement of Tissue Elasticity, Deauville, France October 2012.

54. Barry CT, McCall MN, Almudevar A, Cao WQ and R Mooney. Correlation of miRNA and mRNA expression profiles in fatty liver disease. American Association for the Study of Liver Diseases Liver Meeting, Boston, MA, November 2012.

55. Dokus MK, Vetter M, Gierlach J, Batzold P, Ramaraju G, and CT Barry. An evidence based post transplant HCC surveillance protocol to minimize costs and improve patient safety. American Association for the Study of Liver Diseases Liver Meeting, Boston, MA, November 2012.

56. McCall MN, Barry CT and A Almudevar. Within-patient tumor heterogeneity in multifocal hepatocellular carcinoma. American Association for the Study of Liver Diseases Liver Meeting, Boston, MA, November 2012.

57. Barry CT, Kashyap R, Marroquin C and MO Orloff. Genomic instability regions in hepatocellular carcinoma are associated with prognostic miRNA expression changes. American Association for the Study of Liver Diseases Liver Meeting, Boston, MA, November 2012.

58. Salter M, Dokus MK, Metzler N, Orloff M and CT Barry. Combining environment and opportunity to culturally embed organ donation. UNOS Transplant Forum, New Orleans, LA, April 2013.

59. Dokus K, Salter M and CT Barry. Utilizing social media to engage college students in organ donation advocacy. American Transplant Congress, Seattle, WA, May 2013.

60. Barry CT, Whitney-Miller C and M Orloff. Correlation of global copy number changes with micro RNA expression profiling reveals MUC1 as a marker for HCC recurrence after transplant. American Transplant Congress, Seattle, WA, May 2013.

61. Barry CT, Chuang KS, Dokus K, Whitney-Miller C and M Orloff. Micro RNA biomarker candidates for vascular invasion in hepatocellular carcinoma. American Transplant Congress, Seattle, WA, May 2013.

62. Chuang KS, Whitney-Miller CL, Orloff M, McCall M, Almudevar A and CT Barry. Identification of a microRNA signature for recurrent HCC vascular invasion. American Association for the Study of Liver Diseases Liver Meeting, Washington, DC, November 2013.

63. Barry CT, Partin A, Hah ZG, Chuang KS, Mooney R, Cao WQ, Almudevar A, Rubens D and KJ Parker. Sonoelastographic Dispersion Correlates with Hepatic Triglyceride Content and Histology. American Association for the Study of Liver Diseases Liver Meeting, Washington, DC, November 2013.

64. Barry CT, Hazard C, Cheng G, Hah ZG, Chuang KH, Mooney RA, Cao WQ, Rubens DJ and KJ Parker. Detection of Steatosis Through Shear Speed Dispersion: A Rat Study. American Institute of Ultrasound in Medicine Annual Convention, Las Vegas, NV March 2014.

65. Cellini C, Chuang K, Whitney-Miller C, Godfrey TE, Monson JM and CT Barry. MicroRNA Expression Profiles in Rectal Cancer- a Novel Approach to Lymph Node Staging. The American Society of Colon and Rectal Surgeons Annual Scientific Meeting, Hollywood, FL, May 2014.

66. Barry C, Hah ZG, Partin A, Chuang KH, Mooney R, Cao WQ, Rubens D and K Parker. Sonoelastography to Measure Intrahepatic Fat. Center for Emerging and Innovative Science Technology Showcase, Rochester, NY, April 2014.

67. Huber AR, Orloff MS, Barry CT and Christa L. Whitney-Miller. Accuracy of Vascular Invasion Reporting in Hepatocellular Carcinoma Before and After Implementation of Subspecialty Surgical Pathology Sign-out. College of American Pathologists Meeting, Chicago, IL, September 2014.

68. Barry CT. The Functional Dissection of a Micro RNA Hepatocellular Cancer Recurrence Biomarker. World Gene Convention, Haikuo, China, November 2014.